Introduction

Crystal Viewer is program developed to assist with generating many, many NEB simulations.
It contains tools for setting up migration paths between atoms, generating the files needed for the NEB simulations, and viewing the results of said simulations.

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Contents

• Basic Use
  • Saving and Opening Files
  • Navigation
  • Selecting and Hiding Atoms
  • Structures
  • Modifying Atoms
• Advanced Use
  • Migration Paths
  • Site Energies
  • Timelines
  • Displacement Vectors
  • Saving Potential Coefficients
  • Adding Potentials
• Appearance
  • Atom Properties
  • Rendering
  • Stylesheets
• Simulations
  • Structure Minimizer
  • Annealer
  • Nudged Elastic Band (NEB)
  • Parallel Replica Dynamics (PRD)
  • Temperature Accelerated Dynamics (TAD)
  • Site Vacancy Minimizer
• Guides
  • Annealing From Scratch
  • Generating NEB Simulations

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Credits

Documentation built using mkdocs (see mkdocs.org).

This project uses icons from the Fugue Icon set by Yusuke Kamiyamane (see p.yusukekamiyamane.com).